石濤

Tao Shi, Cécile Huneau, Yue Zhang, Yan Li, Jinming Chen^*, JérÔme Salse^*, Qingfeng Wang^* (2022). The slow-evolving Acorus tatarinowii genome sheds light on ancestral monocot evolution. Nature Plants, 8: 764-777.

Tao Shi^*, Jinming Chen^* (2020). A reappraisal of the phylogenetic placement of the Aquilegia whole-genome duplication. Genome Biology, 21: 295.

Tao Shi, Razgar Seyed Rahmani, Paul F Gugger, Muhua Wang, Hui Li, Yue Zhang, Zhizhong Li, Qingfeng Wang*, Yves Van de Peer^*, Kathleen Marchal^*, Jinming Chen^* (2020). Distinct expression and methylation patterns for genes with different fates following a single whole-genome duplication in flowering plants. Molecular Biology and Evolution, 37(8): 2394-2413.

Zhiyan Gao, Xingyu Yang, Jinming Chen^*, Mark D Rausher^*, Tao Shi^* (2022) Expression inheritance and constraints on cis- and trans-regulatory mutations underlying lotus color variation, Plant Physiology, DOI: 10.1093/plphys/kiac522

Yue Zhang, Xingyu Yang, Yves Van de Peer, Jinming Chen^*, Kathleen Marchal^*, Tao Shi^* (2022). Evolution of isoform-level gene expression patterns across tissues during lotus species divergence. The Plant Journal, 112(3): 830-846.

Hui Li, Xingyu Yang, Qingfeng Wang, Jinming Chen^*, Tao Shi^* (2021). Distinct methylome patterns contribute to ecotypic differentiation in the growth of the storage organ of a flowering plant (sacred lotus). Molecular Ecology, 30:2831–2845.

Hui Li, Xingyu Yang, Yue Zhang, Zhiyan Gao, Yuting Liang, Jinming Chen^*, Tao Shi^* (2021). Nelumbo genome database, an integrative resource for gene expression and variants of Nelumbo nucifera. Scientific Data, 8: 38.

Tao Shi, Kun Wang, Pingfang Yang^* (2017) The evolution of plant microRNAs-insights from a basal eudicot sacred lotus. The Plant Journal, 89(3): 442-457.

Tao Shi^* (2016) Impact of gene family evolutionary histories on phylogenetic species tree inference by gene tree parsimony. Molecular Phylogenetics and Evolution, 96: 9-16. ^[1]